Yue Huang*, Jing Guo*,Xueshuai Han*, Yang Zhao, Xuejing Li, Peiqi Xing, Yulou Liu, Yingxuan Sun, Song Wu, Xuan Lv, Lei Zhou, Yazhuo Zhang, Chuzhong Li#, Weiyan Xie# & Zhaoqi Liu#
Nature Communications doi.org/10.1038/s41467-025-56821-x.

Jingru Sui*, Dan Guo, Xiao Wen, Lei Zhou, Yue Huang, Haoyu Yu, Jinyu Chen, Zhaoqi Liu#
Advanced science 2024:2405626.

Xueshuai Han*, Jingru Sui*, Kui Nie, Yang Zhao, Xuan Lv, Jindou Xie, Leonard Tan, Rex K. H. Au-Yeung, Jiao Ma, Giorgio Inghirami, Olivier Elemento, Wayne Tam# and Zhaoqi Liu#
Leukemia doi.org/10.1038/s41375-024-02349-w.

Jian Zhang*, Jindou Xie*, Ji Huang, Xiangyang Liu, Ruihong Xu, Jonas Tholen, Wojciech P. Galej, Liang Tong, James L. Manley# and Zhaoqi Liu#
Genes & Development doi/10.1101/gad.351154.123.
Featured in OUTLOOK:
12-13-2023: AI-assisted proofreading of RNA splicing

Song Wu, Yue Huang, Mochen Zhang, Zheng Gong, Guoliang Wang, Xinchang Zheng, Wenting Zong, Wei Zhao, Peiqi Xing, Rujiao Li#, Zhaoqi Liu#, Yiming Bao#
Nucleic Acids Research doi.org/10.1093/nar/gkac955.

Zhaoqi Liu*, Akihide Yoshimi*, Jiguang Wang, Hana Cho, Stanley Chun-Wei Lee, Michelle Ki, Lillian Bitner, Timothy Chu, Harshal Shah, Bo Liu, Anthony R. Mato, Peter Ruvolo, Giulia Fabbri, Laura Pasqualucci, Omar Abdel-Wahab and Raul Rabadan
Cancer Discovery 10.6 (2020): 806-821.
Featured in News & Views:
01-06-2020: Splice of Life for Cancer: Missplicing of PPP2R5A by Mutant SF3B1 Leads to MYC Stabilization and Tumorigenesis

Zhaoqi Liu#, Raul Rabadan#
Trends in Cancer doi.org/10.1016/j.trecan.2020.12.015.

Zhaoqi Liu*, Jian Zhang*, Yiwei Sun, Tomin E. Perea-Chamblee, James L. Manley, and Raul Rabadan
Proceedings of the National Academy of Sciences 117.19 (2020): 10305-10312.

Zhaoqi Liu, Ioan Filip, Karen Gomez, Dewaldt Engelbrecht, Shabnum Meer, Pooja N. Lalloo, Pareen Patel, Yvonne Perner, Junfei Zhao, Jiguang Wang, Laura Pasqualucci, Raul Rabadan and Pascale Willem
Blood Cancer Discovery 1.1 (2020): 112-125.
Featured in News & Views:
01-07-2020: The Genomic Landscape of HIV-Associated Plasmablastic Lymphoma

Jin-Ku Lee*, Zhaoqi Liu*, Jason K. Sa*, Sang Shin*, Jiguang Wang*, Mykola Bordyuh, Hee Jin Cho, Oliver Elliott, Timothy Chu, Seung Won Choi, Daniel I. S. Rosenbloom, In-Hee Lee, Yong Jae Shin, Hyun Ju Kang, Donggeon Kim, Sun Young Kim, Moon-Hee Shim, Jusun Kim, Taehyang Lee, Yun Jee Seo, Hyemi Shin, Mijeong Lee, Sung Heon Kim, Yong-Jun Kwon, Jeong-Woo Oh, Minsuk Song, Misuk Kim, Doo-Sik Kong, Jung Won Choi, Ho Jun Seol, Jung-Il Lee, Seung Tae Kim, Joon Oh Park, Kyoung-Mee Kim, Sang-Yong Song, Jeong-Won Lee, Hee-Cheol Kim, Jeong Eon Lee, Min Gew Choi, Sung Wook Seo, Young Mog Shim, Jae Ill Zo, Byong Chang Jeong, Yeup Yoon, Gyu Ha Ryu, Nayoung K.D. Kim, Joon Seol Bae, Woong-Yang Park, Jeongwu Lee, Roel G. W. Verhaak, Antonio Iavarone, Jeeyun Lee, Raul Rabadan, Do-Hyun Nam
Nature Genetics, 50(10), 1399-1411, 2018.
Featured in News & Views:
27-09-18: Cancer cell lines as patient avatars for drug response prediction
24-10-18: Beyond molecular profiling for “precision oncology”
09-11-18: An avatar for precision cancer therapy

Luis Arnes*, Zhaoqi Liu*, Jiguang Wang*, Carlo Maurer, Irina Sagalovskiy, Marta Sanchez-Martin, Nikhil Bommakanti, Diana C Garofalo, Dina A Balderes, Lori Sussel, Kenneth P Olive, Raul Rabadan
Gut 68.3 (2019): 499-511.

Bo Liu*, Zhaoqi Liu*, Sisi Chen, Michelle Ki, Caroline Erickson, Jorge S. Reis-Filho, Benjamin H. Durham, Qing Chang, Elisa de Stanchina, Yiwei Sun, Raul Rabadan, Omar Abdel-Wahab, and Sarat Chandarlapaty
The Journal of Clinical Investigation (2020): 10.1172/JCI138315.

Zhaoqi Liu, Shihua Zhang
BMC genomics 16.1 (2015): 503.

Zhaoqi Liu, Shihua Zhang and Xiangsun Zhang
Scientific reports 4 (2014): 4002.

Yue Huang*, Jing Guo*,Xueshuai Han*, Yang Zhao, Xuejing Li, Peiqi Xing, Yulou Liu, Yingxuan Sun, Song Wu, Xuan Lv, Lei Zhou, Yazhuo Zhang, Chuzhong Li#, Weiyan Xie# & Zhaoqi Liu#
Nature Communications doi.org/10.1038/s41467-025-56821-x.

Danilo Fiore*, Luca Vincenzo Cappelli*, Zhaoq Liu, Nikita Kotlov, Maria Sorokina, Jude Phillip, Paul Zumbo, Liron Yoffe, Paola Ghione, Anqi Wang, Xueshuai Han, Abigail Taylor, William Chiu, Valentina Fragliasso, Fabrizio Tabbo, Nahuel Zamponi, Nicolás Di Siervi, Clarisse Kayembe, Giovanni Medico, Ruchi P Patel, Marcello Gaudiano, Rodolfo Machiorlatti, Giuseppina Astone, Maria Teresa Cacciapuoti, Giorgia Zanetti, Claudia Pignataro, Ruiz Arvin Eric, Sanjay Patel, Francesca Zammarchi, Claudio Zanettini, Lucio Queiroz, Anastasia Nikitina, Olga Kudryashova, Anton Karelin, Daniil Nikitin, Dmitry Tychinin, Ekaterina Postovalova, Alexander Bagaev, Viktor Svekolkin, Ekaterina Belova, Katerina Tikhonova, Sandrine Degryse, Chengqi Xu, Domenico Novero, Maurilio Ponzoni, Enrico Tiacci, Brunangelo Falini, Joo Song, Inna Khodos, Elisa De Stanchina, Gabriele Macari, Luciana Cafforio, Simone Gardini, Roberto Piva, Enzo Medico, Samuel Y Ng, Allison Moskowitz, Zachary Epstein, Andrew Intlekofer, Dogan Ahmed, Wing C Chan, Peter Martin, Jia Ruan, Francesco Bertoni, Robin Foà, Joshua D Brody, David M Weinstock, Jaspreet Osan, Laura Santambrogio, Oliver Elemento, Doron Betel, Wayne Tam, Marco Ruella, Leandro Cerchietti, Raul Rabadan, Steven Horwitz, Giorgio Inghirami#
Cell Reports Medicine 102029.

Xinzhi Wu*, Xueshuai Han*, Haibo Zhu*, Mingxuan Li, Lei Gong, Sicheng Jing, Weiyan Xie#, Zhaoqi Liu#, Chuzhong Li#, Yazhuo Zhang#
Journal of Experimental & Clinical Cancer Research 2025 Jan 27;44(1):27.

Jingru Sui*, Dan Guo, Xiao Wen, Lei Zhou, Yue Huang, Haoyu Yu, Jinyu Chen, Zhaoqi Liu#
Advanced science 2024:2405626.

Minu Seong, Pedro Bak‐Gordon, Zhaoqi Liu, Peter D Canoll, James L Manley
GLIA 2025 Feb;73(2):251-70.

Xueshuai Han*, Jingru Sui*, Kui Nie, Yang Zhao, Xuan Lv, Jindou Xie, Leonard Tan, Rex K. H. Au-Yeung, Jiao Ma, Giorgio Inghirami, Olivier Elemento, Wayne Tam# and Zhaoqi Liu#
Leukemia doi.org/10.1038/s41375-024-02349-w.

Kausik Regunath, Vitalay Fomin, Pingzhang Wang, Zhaoqi Liu, Mainul Hoque, Bin Tian, Raul Rabadan, Carol Prives
Molecular Cancer Research doi.org/10.1158/1541-7786.MCR-23-0295

Xueshuai Han, Zhaoqi Liu#
Genomics, Proteomics & Bioinformatics doi.org/10.1093/gpbjnl/qzae015

Jian Zhang*, Jindou Xie*, Ji Huang, Xiangyang Liu, Ruihong Xu, Jonas Tholen, Wojciech P. Galej, Liang Tong, James L. Manley# and Zhaoqi Liu#
Genes & Development doi/10.1101/gad.351154.123.
Featured in OUTLOOK:
12-13-2023: AI-assisted proofreading of RNA splicing

Quanhua Mu, Ruichao Chai, Bo Pang, Yingxi Yang, Hanjie Liu, Zheng Zhao, Zhaoshi Bao, Dong Song, Zhihan Zhu, Mengli Yan, Biaobin Jiang, Zongchao Mo, Jihong Tang, Jason K Sa, Hee Jin Cho, Yuzhou Chang, Kaitlin Hao Yi Chan, Danson Shek Chun Loi, Sindy Sing Ting Tam, Aden Ka Yin Chan, Angela Ruohao Wu, Zhaoqi Liu, Wai Sang Poon, Ho Keung Ng, Danny Tat Ming Chan, Antonio Iavarone, Do-hyun Nam, Tao Jiang, Jiguang Wang
Science Translational Medicine 15, no. 716 (2023): eadh4181.

Hao Guo*, Jin Xu*, Peiqi Xing*, Qilong Li, Donghai Wang, Chao Tang, Bruno Palhais, Juliette Roels, Jiaxu Liu, Sa Pan, Jinyan Huang, Zhaoqi Liu, Ping Zhu, Tom Taghon, Guoliang Qing, Pieter Van Vlierberghe, Hudan Liu
Haematologica doi.org/10.3324/haematol.2022.282066

Nan Han, Zhaoqi Liu#
Frontiers in Cell and Developmental Biology doi.org/10.3389/fcell.2023.1232146

Jian Zhang, Ji Huang, Ke Xu, Peiqi Xing, Yue Huang, Zhaoqi Liu, Liang Tong, James L. Manley
Proceedings of the National Academy of Sciences 119 (49) e2216712119.

Song Wu, Yue Huang, Mochen Zhang, Zheng Gong, Guoliang Wang, Xinchang Zheng, Wenting Zong, Wei Zhao, Peiqi Xing, Rujiao Li#, Zhaoqi Liu#, Yiming Bao#
Nucleic Acids Research doi.org/10.1093/nar/gkac955.

Yen K. Lieu, Zhaoqi Liu, Abdullah M. Alig, Xin Weih, Alex Pensond, Jian Zhanga, Xiuli Anh, Raul Rabadand, Azra Razab, James L. Manleya, Siddhartha Mukherjee
Proceedings of the National Academy of Sciences 2022 Jan 4;119(1).

Delin Chen, Bo Chu, Xin Yang, Zhaoqi Liu, Ying Jin, Ning Kon, Raul Rabadan，Xuejun Jiang, Brent R. Stockwell，Wei Gu
Nature Communications (2021) 12:3644

Camila Prieto, Diu Nguyen, Zhaoqi Liu, Justin Wheat, Alexendar Perez, Saroj Gourkanti, Timothy Chou, Anthony Velleca, Thomas Rohwetter, Ersilia Barin, Arthur Chow, James Taggart, Katerina Hoskova, Meera Dhodapkar, Alexandra Schurer, Trevor S Barlowe, Ly P Vu, Christina Leslie, Ulrich Steidl, Raul Rabadan, Michael G Kharas
Nature Cancer 10.1038/s43018-021-00220-w

Zhaoqi Liu#, Raul Rabadan#
Trends in Cancer doi.org/10.1016/j.trecan.2020.12.015.

Mai Sato, Andrew Walter Liebau, Zhaoqi Liu, Lizhi Liu, Raul Rabadan, Jean Gautier
Journal of Cell Biology (2021) 220 (2): e201807163.

Zhaoqi Liu*, Akihide Yoshimi*, Jiguang Wang, Hana Cho, Stanley Chun-Wei Lee, Michelle Ki, Lillian Bitner, Timothy Chu, Harshal Shah, Bo Liu, Anthony R. Mato, Peter Ruvolo, Giulia Fabbri, Laura Pasqualucci, Omar Abdel-Wahab and Raul Rabadan
Cancer Discovery 10.6 (2020): 806-821.
Featured in News & Views:
01-06-2020: Splice of Life for Cancer: Missplicing of PPP2R5A by Mutant SF3B1 Leads to MYC Stabilization and Tumorigenesis

Zhaoqi Liu*, Jian Zhang*, Yiwei Sun, Tomin E. Perea-Chamblee, James L. Manley, and Raul Rabadan
Proceedings of the National Academy of Sciences 117.19 (2020): 10305-10312.

Zhaoqi Liu, Ioan Filip, Karen Gomez, Dewaldt Engelbrecht, Shabnum Meer, Pooja N. Lalloo, Pareen Patel, Yvonne Perner, Junfei Zhao, Jiguang Wang, Laura Pasqualucci, Raul Rabadan and Pascale Willem
Blood Cancer Discovery 1.1 (2020): 112-125.
Featured in News & Views:
01-07-2020: The Genomic Landscape of HIV-Associated Plasmablastic Lymphoma

Danilo Fiore, Luca Vincenzo Cappelli, Paul Zumbo, Jude M. Phillips, Zhaoqi Liu, Shuhua Cheng , Liron Yoffe, Paola Ghione, Federica Di Maggio, Ahmet Dogan, Inna Khodos, Elisa de Stanchina, Joseph Casano, Clarisse Kayembe, Wayne Tam, Doron Betel, Robin Foa', Leandro Cerchietti, Raul Rabadan, Steven Horwitz, David M. Weinstock and Giorgio Inghirami
Cancers 12.6 (2020): 1603.

Yen K. Lieu, Zhaoqi Liu, Abdullah M. Ali, Xin Wei, Alex Penson, Jian Zhang, Xiuli An, Raul Rabadan, Azra Raza, James L. Manley, Siddhartha Mukherjee
biorxiv

Suji Han, Hyemi Shin, Jin-Ku Lee, Zhaoqi Liu, Raul Rabadan, Jeongwu Lee, Jihye Shin, Cheolju Lee, Heekyoung Yang, Donggeon Kim, Sung Heon Kim, Jooyeon Kim, Jeong-Woo Oh, Doo-Sik Kong, Jung-Il Lee, Ho Jun Seol, Jung Won Choi, Hyun Ju Kang, Do-Hyun Nam
Experimental & molecular medicine 51.12 (2019): 1-11.

Jian Zhang, Abdullah M Ali, Yen K Lieu, Zhaoqi Liu, Jianchao Gao, Raul Rabadan, Azra Raza, Siddhartha Mukherjee, James L Manley
Molecular cell 2019, 76(1): 82-95. e7.

Luis Arnes*, Zhaoqi Liu*, Jiguang Wang*, Carlo Maurer, Irina Sagalovskiy, Marta Sanchez-Martin, Nikhil Bommakanti, Diana C Garofalo, Dina A Balderes, Lori Sussel, Kenneth P Olive, Raul Rabadan
Gut 68.3 (2019): 499-511.

Jin-Ku Lee*, Zhaoqi Liu*, Jason K. Sa*, Sang Shin*, Jiguang Wang*, Mykola Bordyuh, Hee Jin Cho, Oliver Elliott, Timothy Chu, Seung Won Choi, Daniel I. S. Rosenbloom, In-Hee Lee, Yong Jae Shin, Hyun Ju Kang, Donggeon Kim, Sun Young Kim, Moon-Hee Shim, Jusun Kim, Taehyang Lee, Yun Jee Seo, Hyemi Shin, Mijeong Lee, Sung Heon Kim, Yong-Jun Kwon, Jeong-Woo Oh, Minsuk Song, Misuk Kim, Doo-Sik Kong, Jung Won Choi, Ho Jun Seol, Jung-Il Lee, Seung Tae Kim, Joon Oh Park, Kyoung-Mee Kim, Sang-Yong Song, Jeong-Won Lee, Hee-Cheol Kim, Jeong Eon Lee, Min Gew Choi, Sung Wook Seo, Young Mog Shim, Jae Ill Zo, Byong Chang Jeong, Yeup Yoon, Gyu Ha Ryu, Nayoung K.D. Kim, Joon Seol Bae, Woong-Yang Park, Jeongwu Lee, Roel G. W. Verhaak, Antonio Iavarone, Jeeyun Lee, Raul Rabadan, Do-Hyun Nam
Nature Genetics, 50(10), 1399-1411, 2018.
Featured in News & Views:
27-09-18: Cancer cell lines as patient avatars for drug response prediction
24-10-18: Beyond molecular profiling for “precision oncology”
09-11-18: An avatar for precision cancer therapy

Magdolna Djurec, Osvaldo Graña, Albert Lee, Kevin Troulé, Elisa Espinet, Lavinia Cabras, Carolina Navas, María Teresa Blasco, Laura Martín-Díaz, Miranda Burdiel, Jing Li, Zhaoqi Liu, Mireia Vallespinós, Francisco Sanchez-Bueno, Martin R Sprick, Andreas Trumpp, Bruno Sainz, Fátima Al-Shahrour, Raul Rabadan, Carmen Guerra, Mariano Barbacid
Proceedings of the National Academy of Sciences 115.6 (2018): E1147-E1156.

Jin-Ku Lee, Jiguang Wang, Jason K Sa, Erik Ladewig, Hae-Ock Lee, In-Hee Lee, Hyun Ju Kang, Daniel S Rosenbloom, Pablo G Camara, Zhaoqi Liu, Patrick van Nieuwenhuizen, Sang Won Jung, Seung Won Choi, Junhyung Kim, Andrew Chen, Kyu-Tae Kim, Sang Shin, Yun Jee Seo, Jin-Mi Oh, Yong Jae Shin, Chul-Kee Park, Doo-Sik Kong, Ho Jun Seol, Andrew Blumberg, Jung-Il Lee, Antonio Iavarone, Woong-Yang Park, Raul Rabadan & Do-Hyun Nam
Nature Genetics, 49(4), 594-599, 2017.

Jiguang Wang, Emanuela Cazzato, Erik Ladewig, Veronique Frattini, Daniel I S Rosenbloom, Sakellarios Zairis, Francesco Abate, Zhaoqi Liu, Oliver Elliott, Yong-Jae Shin, Jin-Ku Lee, In-Hee Lee, Woong-Yang Park, Marica Eoli, Andrew J Blumberg, Anna Lasorella, Do-Hyun Nam, Gaetano Finocchiaro, Antonio Iavarone & Raul Rabadan
Nature Genetics 48(7), 768-776, 2016.

Xuemei Ning, Zhaoqi Liu, Shihua Zhang
Physica A: Statistical Mechanics and its Applications 452 (2016): 258-265.